Me: This article on the link between height and the susceptibility for the risk of osteoarthritis seems to show that the most common area in the genome which show height variation effects is around the GDF5 producing gene area. I must do more research on the GDF5 gene and GDF5 in general.
What I do want to note is that the study and article was published in 2008, before the news of HMGA2 or LIN28B or the world wide gene project was published in Nature. The study looked at over 35,000 people and looked at over 2 million genetic variants. The thing is that this gene was fond to have less than 1% influence over the entire genetic influence. The effect was only about 4 milimeters on average, which ranged up to over 1 cm in height difference.
The most important part of the sciencedaily articles is….
The variants most strongly associated with height lie in a region of the human genome thought to influence expression of a gene for growth differentiation factor 5, called GDF5, which is a protein involved in the development of cartilage in the legs and other long bones. Rare variants in the GDF5 gene have been associated with disorders of skeletal development, and more common variants recently have been tied to susceptibility to osteoarthritis of the hip and knees in Asian and European populations.
It says that GDF-5 is involved in the development of cartilage in the legs and other long bones. This might be a real breakthrough in our understanding of which genes control over height. The lack of the gene producing its proteins leads to a moderate decrease in height and increased susceptibility to osteoarthritis.
From the article on Science Daily
Genetic Connection Between Short Stature And Arthritis Uncovered
ScienceDaily (Jan. 17, 2008) — Common genetic variants linked to arthritis may also play a role in human height, a new study shows.
The new study confirms observations by health professionals of a connection between decreased height and increased risk of osteoarthritis, the most common form of arthritis. Researchers speculate that both extremes of height may be associated with osteoarthritis for different reasons. Shorter bones and/or less cartilage may render the joints more susceptible to damage, while longer bones may produce greater levels of damaging stress on the joints.
The findings are exciting for several reasons, said Gonçalo Abecasis, assistant professor in the School of Public Health. For one, there are many genes that control height, but only a few associated with osteoarthritis, he said. The international study was co-led by the University of Michigan School of Public Health.
“In this case the gene we picked also is important in osteoarthritis and it’s actually quite hard to find genes for osteoarthritis,” said Abecasis, who co-directed the study with Karen Mohlke of the University of North Carolina. “One of the things we were excited about is you could study (height) in many people, and once you’ve done that you have a short list of genes that you can then study for what they do in terms of osteoarthritis.”
The findings also add to the general understanding of height.
“It is useful to know all genes responsible for height variation, so we are reassured if our baby is shorter than others because he has a collection of “short” alleles on his DNA, and not because he has something wrong, like a metabolism disorder,” said Serena Sanna, co-author who worked on the paper as a post-doctoral student in Abecasis’ group and who is now at the National Research Council di Cagliari in Italy. Anne Jackson, a research specialist at U-M, is also a co-author.
To arrive at their findings, researchers from the United States and Europe analyzed the genomes of more than 35,000 people. If there were average height differences for individuals with certain genetic variants, this indicated that something in that genomic region containing the variants likely influenced height. In this particular study, researchers initially examined the effects of more than 2 million genetic variants.
The new variant accounts for less than 1 percent of the genetic basis of height, and is associated with an average difference in height of about 0.4 centimeters, or a little more than an eighth of an inch. The range went from 0.3 cm to 1.4 cm, depending on the population and whether an individual had one or two copies of the so-called taller version of the variant. A variety of factors, including genetics, diet and prenatal environment, interact to determine how tall someone grows. It is currently thought that genetic factors are responsible for at least 80 percent of the variation in height among people.
The variants most strongly associated with height lie in a region of the human genome thought to influence expression of a gene for growth differentiation factor 5, called GDF5, which is a protein involved in the development of cartilage in the legs and other long bones. Rare variants in the GDF5 gene have been associated with disorders of skeletal development, and more common variants recently have been tied to susceptibility to osteoarthritis of the hip and knees in Asian and European populations.
The researchers speculate that genetic variants that reduce production of the GDF5 protein may affect the amount of cartilage in the spine, the proportion of limbs and/or the angles of joints, resulting in both a modest decrease in height and increased susceptibility to osteoarthritis.
The completion of the map of human genetic variation, or HapMap, has fueled a surge in this type of genome-wide association study, with most of the growth coming in the past 10 months. Researchers around the globe have now associated more than 60 common DNA variants with the risk of more than 20 common diseases or related traits.
The journal Nature Genetics will publish the findings online Jan. 13.
The research received major support from National Human Genome Research Institute, National Institute on Aging, National Institute of Diabetes and Digestive and Kidney Diseases, and the National Heart, Lung and Blood Institute, all of which are part of the National Institutes of Health.
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